Silene latifolia

Tandemly repeated sequences

There are 2 pages with 11 entries

Name Description Protein homology Other info Source
ITR Interstitial telomere-like repeats; ITRs and ITR-adjacent sequences (IASs). https://doi.org/10.1007/s00412-002-0213-5
KpnI Family of satellite DNA on the distal ends of chromosomes. (?Sl-distal-satDNA?). https://doi.org/10.1007/s10265-003-0106-6
Microsatellites Majority of microsatellites are accumulated on the q arm of the Y chromosome. https://doi.org/10.1139/G08-024
RMY1 Subtelomeric repetitive sequence. Detected at both ends of the X chromosome and at one end near the pseudoautosomal region of the Y chromosome. high similarityto X-43.1, identical localization. Homology to rDNA genes. https://www.ncbi.nlm.nih.gov/pubmed/10189703
SacI (family) Family of satellite DNA sequences on subtelomeric positions of sex chromosomes. https://www.researchgate.net/publication/292328703_A_subtelomeric_satellite_DNA_family_isolated_from_the_genome_of_the_dioecious_plant_Silene_latifolia
STAR-C Centromeric satellite. https://doi.org/10.1007/s10577-008-1254-2
STAR-Y Tandem repeat, carrying a small deletion, specifically localized on the q-arm of the Y chromosome. https://doi.org/10.1007/s10577-008-1254-2
TR1 Tandem repeat with monomer length of 53 bp. Localized in 45S rDNA loci. https://doi.org/10.1007/s10577-008-1254-2
TRAYC Satellite DNA - highly abundant in the non-recombining centromeric and pericentromeric region of the Y. https://doi.org/10.1007/s00412-006-0065-5
X43.1 Member of SacI family. Structure creating junctions between telomeres and a major subtelomeric repeat. Located at both ends of six pairs of autosomes and the X chromosome, and at one end of four pairs of autosomes and the Y chromosome + sequences X-3, X-41 and X-36. https://www.researchgate.net/publication/10787588_Characterization_of_telomere-subtelomere_junctions_in_Silene_latifolia

Sex-chrom database 2021