Silene latifolia

Transposable elements

There are 2 pages with 13 entries

Name Description Protein homology Other info Source
Angela Ty1-copia retrotransposon from lineage TORK. https://doi.org/10.1186/s12864-018-4547-7
Athila Gypsy element. Is almost missing in the Y chromosome. One of the most abundant TEs in the S. latifolia genome. https://doi.org/10.1159/000362142
LINE LINEs - long interspersed nuclear elements, non-LTR retrotransposons terminating at the 39 end with a poly(A) tract. https://doi.org/10.1371/journal.pone.0031898
MITE Miniature inverted-repeat transposable element, non-autonomous DNA transposon. https://doi.org/10.1534/genetics.107.081745
Ogre Ty3-gypsy long terminal repeat. Three Ogre families ubiquitous in the S. latifolia genome. One family is nearly absent on the Y chromosome. Genome size expanded due to amplification of this giant gypsy- type retrotransposon. https://doi.org/10.1111/nph.12669
Peabody Ty3-gypsy element bearing chromodomain integrase, from the Chromoviridae branch. https://doi.org/10.1371/journal.pone.0031898
Retand Belongs to gypsy-like family. They are consisting of a non-autonomous element Retand-1 and its autonomous partner Retand-2. They share similar long terminal repeat (LTR) sequences. Missing on subtelomere of short arm of Y. https://doi.org/10.1007/s00438-006-0140-x
Thelma Tag2-like transposase belonging to hAT superfamily of DNA transposons, branching with the Ac/Tam3 clade. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1462803/
Thelma 13 Tag2-like transposase belonging to hAT superfamily of DNA transposons, branching with the Ac/Tam3 clade. Functional, likely to be linked to the X or autosomes. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1462803/
Thelma 7 Tag2-like transposase belonging to hAT superfamily of DNA transposons, branching with the Ac/Tam3 clade. Y-linked copy, has acquired several mutations, large indels disruptin coding region (assumed to be connected to the Y degradation). https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1462803/

Sex-chrom database 2021